[EMBOSS] Parameter discrepency
Ryan Golhar
golharam at umdnj.edu
Thu Nov 3 00:15:06 UTC 2005
I'm using needle to align sequences...I need the output in fasta format.
Looking the the tfm for needle, under associated qualifers for -outfile,
the parameter -aformat3 is listed.
Further below is the section on Output file format which lists the
parameter
as -aformat.
I tried -aformat and that seems to work, so does -aformat3. Is one of
them not supposed to be there or just a carryover from an older version
of emboss? The docs talk about one version but use the other in the
example...
Ryan
More information about the EMBOSS
mailing list