[EMBOSS] EMBOSS database configurartion......

Richard Rothery Richard.Rothery at ualberta.ca
Thu May 26 15:33:53 UTC 2005


Hi All,

 

How does one configuire EMBOSS to retrieve sequences directly from
swissprot/trembl? Specifically what lines have to be added to the
database configuration file? Something that links to the EXPASY site?
The idea here is to use SEQRET to grab the sequences. I have no room on
my system for the entire database, indexing etc...

 

Hopefully, the answer to this one will be simple!!

 

Thanks,

 

Richard

 

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CIHR Membrane Protein Research Group,

Department of Biochemistry, University of Alberta,

Edmonton T6G 2H7

Ph. (780) 492-2229 Fax. (780) 492-0886

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