[EMBOSS] Installation help

[Michael Leong]

If you're using tomcat 5.5.9, get the newer install-jemboss-server.sh 
script from the website.

mike



At 08:59 AM 5/25/2005, Jeremy Mann wrote:
>I am having a very difficult time getting the EMBOSS client/server install
>on a Suse Linux 9.1 system. I have followed the instructions precisely.
>Tomcat starts, then gives me this error. Note I have also tried this with
>the newer 5.5.9 Tomcat (with new install file) and this still happens:
>
>Please wait, starting tomcat.......
>Using CATALINA_BASE:   /usr/local/jakarta-tomcat-5.0.30
>Using CATALINA_HOME:   /usr/local/jakarta-tomcat-5.0.30
>Using CATALINA_TMPDIR: /usr/local/jakarta-tomcat-5.0.30/temp
>Using JAVA_HOME:       /usr/lib/java
>
>
>May 25, 2005 10:27:53 AM org.apache.axis.utils.JavaUtils
>isAttachmentSupported
>WARNING: Unable to find required classes (javax.activation.DataHandler and
>javax.mail.internet.MimeMultipart). Attachment support is disabled.
>Processing file JembossServer.wsdd
>Exception: AxisFault
>  faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
>  faultSubcode:
>  faultString: java.net.ConnectException: Connection refused
>  faultActor:
>  faultNode:
>  faultDetail:
>         {http://xml.apache.org/axis/}stackTrace:java.net.ConnectException:
>Connection refused
>         at java.net.PlainSocketImpl.socketConnect(Native Method)
>         at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:305)
>         at
>java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:171)
>         at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:158)
>         at java.net.Socket.connect(Socket.java:452)
>         at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>         at
>sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
>         at
>sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
>         at java.lang.reflect.Method.invoke(Method.java:324)
>         at
>org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:135)
>         at
>org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:99)
>         at
>org.apache.axis.transport.http.HTTPSender.getSocket(HTTPSender.java:130)
>         at
>org.apache.axis.transport.http.HTTPSender.writeToSocket(HTTPSender.java:382)
>         at
>org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:88)
>         at
>org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
>         at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
>         at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
>         at org.apache.axis.client.AxisClient.invoke(AxisClient.java:147)
>         at org.apache.axis.client.Call.invokeEngine(Call.java:2737)
>         at org.apache.axis.client.Call.invoke(Call.java:2720)
>         at org.apache.axis.client.Call.invoke(Call.java:1756)
>         at org.apache.axis.client.AdminClient.process(AdminClient.java:438)
>         at org.apache.axis.client.AdminClient.process(AdminClient.java:403)
>         at org.apache.axis.client.AdminClient.process(AdminClient.java:409)
>         at org.apache.axis.client.AdminClient.process(AdminClient.java:319)
>         at org.apache.axis.client.AdminClient.main(AdminClient.java:462)
>
>         {http://xml.apache.org/axis/}hostname:bcf
>
>Tomcat is active on port 8080, even though I told the install script to
>use 8443. Also, there is no Axis service for emboss, only version and
>admin.
>
>What is going wrong with my installation?
>
>
>
>
>--
>Jeremy Mann
>jeremy at biochem.uthscsa.edu
>
>University of Texas Health Science Center
>Bioinformatics Core Facility
>http://www.bioinformatics.uthscsa.edu
>Phone: (210) 567-2672