[EMBOSS] Installation help

[Jeremy Mann]

I am having a very difficult time getting the EMBOSS client/server install
on a Suse Linux 9.1 system. I have followed the instructions precisely.
Tomcat starts, then gives me this error. Note I have also tried this with
the newer 5.5.9 Tomcat (with new install file) and this still happens:

Please wait, starting tomcat.......
Using CATALINA_BASE:   /usr/local/jakarta-tomcat-5.0.30
Using CATALINA_HOME:   /usr/local/jakarta-tomcat-5.0.30
Using CATALINA_TMPDIR: /usr/local/jakarta-tomcat-5.0.30/temp
Using JAVA_HOME:       /usr/lib/java


May 25, 2005 10:27:53 AM org.apache.axis.utils.JavaUtils
isAttachmentSupported
WARNING: Unable to find required classes (javax.activation.DataHandler and
javax.mail.internet.MimeMultipart). Attachment support is disabled.
Processing file JembossServer.wsdd
Exception: AxisFault
 faultCode: {http://schemas.xmlsoap.org/soap/envelope/}Server.userException
 faultSubcode:
 faultString: java.net.ConnectException: Connection refused
 faultActor:
 faultNode:
 faultDetail:
        {http://xml.apache.org/axis/}stackTrace:java.net.ConnectException:
Connection refused
        at java.net.PlainSocketImpl.socketConnect(Native Method)
        at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:305)
        at
java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:171)
        at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:158)
        at java.net.Socket.connect(Socket.java:452)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at
sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at
sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:324)
        at
org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:135)
        at
org.apache.axis.components.net.DefaultSocketFactory.create(DefaultSocketFactory.java:99)
        at
org.apache.axis.transport.http.HTTPSender.getSocket(HTTPSender.java:130)
        at
org.apache.axis.transport.http.HTTPSender.writeToSocket(HTTPSender.java:382)
        at
org.apache.axis.transport.http.HTTPSender.invoke(HTTPSender.java:88)
        at
org.apache.axis.strategies.InvocationStrategy.visit(InvocationStrategy.java:32)
        at org.apache.axis.SimpleChain.doVisiting(SimpleChain.java:118)
        at org.apache.axis.SimpleChain.invoke(SimpleChain.java:83)
        at org.apache.axis.client.AxisClient.invoke(AxisClient.java:147)
        at org.apache.axis.client.Call.invokeEngine(Call.java:2737)
        at org.apache.axis.client.Call.invoke(Call.java:2720)
        at org.apache.axis.client.Call.invoke(Call.java:1756)
        at org.apache.axis.client.AdminClient.process(AdminClient.java:438)
        at org.apache.axis.client.AdminClient.process(AdminClient.java:403)
        at org.apache.axis.client.AdminClient.process(AdminClient.java:409)
        at org.apache.axis.client.AdminClient.process(AdminClient.java:319)
        at org.apache.axis.client.AdminClient.main(AdminClient.java:462)

        {http://xml.apache.org/axis/}hostname:bcf

Tomcat is active on port 8080, even though I told the install script to
use 8443. Also, there is no Axis service for emboss, only version and
admin.

What is going wrong with my installation?




-- 
Jeremy Mann
jeremy at biochem.uthscsa.edu

University of Texas Health Science Center
Bioinformatics Core Facility
http://www.bioinformatics.uthscsa.edu
Phone: (210) 567-2672