[EMBOSS] How to exclude X11 when Compile Emboss

Jean Mao maoj at helix.nih.gov
Mon Jul 25 15:20:39 UTC 2005


> Hello all,
> 
> I am building emboss package on our linux cluster. Since it will be for
> multiple batch run purpose, there is no need for us to include X11. I got
> the following error during 'make install'. Can someone tell me which
> programs use X11 and how to turn it off in them before running 'make
> install'? Many thanks!!!
> -------------------------------------------------------
> make[2]: Entering directory `/usr/local/EMBOSS-3.0.0/emboss'
> /bin/sh ../libtool --tag=CC --mode=link gcc  -O2   -o aaindexextract
> aaindexextract.o ../nucleus/libnucleus.la ../ajax/libajaxg.la
> ../ajax/libajax.la ../plplot/libplplot.la -lX11  -lm 
> gcc -O2 -o .libs/aaindexextract aaindexextract.o
> ../nucleus/.libs/libnucleus.so ../ajax/.libs/libajaxg.so
> ../ajax/.libs/libajax.so ../plplot/.libs/libplplot.so -lX11 -lm
> -Wl,--rpath -Wl,/usr/local/EMBOSS-3.0.0/lib
> /usr/bin/ld: cannot find -lX11
> collect2: ld returned 1 exit status
> make[2]: *** [aaindexextract] Error 1
> make[2]: Leaving directory `/usr/local/EMBOSS-3.0.0/emboss'
> make[1]: *** [install-recursive] Error 1
> make[1]: Leaving directory `/usr/local/EMBOSS-3.0.0/emboss'
> make: *** [install-recursive] Error 1
> ----------------------------------------------------------
> Jean
> 



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