[EMBOSS] any DNA or RNA program similar to pepstat ?

[Dr J.C. Ison]

Hi James

There's no single app to cover all your request, but some of the 
following might help (see http://emboss.sourceforge.net/apps/)

dan         Plot melting temperatures for DNA. 
freak       Residue/base frequency table or plot 
extractfeat Extract features from a sequence 
geecee      Calculates the fractional GC content of nucleic acid sequences 
infoseq     Displays some simple information about sequences 
isochore    Plots isochores in large DNA sequences 
newcpgseek  Reports CpG rich regions 
remap       Display a sequence with restriction cut sites, translation etc.. 
showfeat    Show features of a sequence. 

Please have a look at what's available and if you require something 
else / new functionality etc please get back in touch.

Cheers

Jon



JT wrote:
> 
> Hi,
> 
> Is there any program that can output a report of simple DNA/RNA sequence
> information including e.g.
> a) Molecular weight
> b) Number of residues
> c) Average residue weight
> d) %G, %C, %A, %T, %GC
> e) Melting temp
> f) charge etc.
> 
> Thanks
> James
> _______________________________________________
> EMBOSS mailing list
> EMBOSS at emboss.open-bio.org
> http://newportal.open-bio.org/mailman/listinfo/emboss

-- 
Jon C. Ison, PhD
Proteomics Applications Group
MRC Rosalind Franklin Centre for Genomics Research
Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SB, UK
Tel: +44 1223 494500  Fax: +44 1223 494512
E-mail: jison at rfcgr.mrc.ac.uk  Web: http://www.rfcgr.mrc.ac.uk