[EMBOSS] Stretcher & custom scoring matrix
golharam at umdnj.edu
Mon Dec 5 22:40:48 UTC 2005
I'm using stretcher with a custom scoring matrix I created. It works
for 99% of my sequence. Occassionally, I get the waring:
Warning: stretcher CheckScore failed
I'm using a gapopen penalty of 160000 and gapextend of 40000. This is
because I need to normalize my matrix from floating point to integer. I
suspect this has something to do with it.
What does this error mean?
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