[EMBOSS] emboss.defaut to access the enspep
jison at ebi.ac.uk
Thu Aug 18 06:57:45 UTC 2005
enspep and enspepp are just examples used in the showdb
You would need to create a database definition in your
'emboss.default' file (or '.embossrc' in your home directory).
Instructions are here:
Get back in touch if you get stuck.
> Hi, everyone,
> There is the following descriptions in the document of showdb
> command (/usr/share/EMBOSS/doc/programs/text/showdb.txt)
>> % showdb
>> Displays information on the currently available databases
>> # Name Type ID Qry All Comment
>> # ==== ==== == === === =======
>> enspep P OK OK OK ENSEMBL pep
>> enspepp P OK OK OK ENSEMBL pep predicted
> But I can't access the enspep (ENSEMBL pep) and enspepp
> (ENSEMBL pep predicted) by the showdb command.
> How should I describe the emboss.default (or .embossrc) to
> be able to access the enspep and enspepp.
> Would you please show me how to write the emboss.defaut
> (or .embossrc) in my case?
> Yuichi Yoshida <yuichiyoshi at gmail.com>
> EMBOSS mailing list
> EMBOSS at emboss.open-bio.org
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