[EMBOSS] emboss.defaut to access the enspep

[Jon Ison]

Dear Yuichi

enspep and enspepp are just examples used in the showdb
documentation.

You would need to create a database definition in your
'emboss.default' file (or '.embossrc' in your home directory).

Instructions are here:
http://emboss.sourceforge.net/docs/themes/Databases.html

Get back in touch if you get stuck.

J:)



> Hi, everyone,
>
> There is the following descriptions in the document of showdb
> command (/usr/share/EMBOSS/doc/programs/text/showdb.txt)
>
>> % showdb
>> Displays information on the currently available databases
>>
>> # Name        Type ID  Qry All Comment
>> # ====        ==== ==  === === =======
>> enspep        P    OK  OK  OK  ENSEMBL pep
>> enspepp       P    OK  OK  OK  ENSEMBL pep predicted
>
> But I can't access the enspep (ENSEMBL pep) and enspepp
> (ENSEMBL pep predicted) by the showdb command.
>
> How should I describe the emboss.default (or .embossrc) to
> be able to access the enspep and enspepp.
>
> Would you please show me how to write the emboss.defaut
> (or .embossrc) in my case?
>
> -----
> Yuichi Yoshida <yuichiyoshi at gmail.com>
>
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