[EMBOSS] CUTG

[Carole Louis]

Thanks. I think it's a good idea to read codon usage tables directly on
kasuka website. 

Le mer 10/03/2004 à 10:29, Peter Rice a écrit :

> Carole Louis wrote:
> 
> > Thank you. I'm looking for Spodoptera frugiperda. I thought it was
> > Espo.cut but it seems very different of the table I found at
> > http://www.kazusa.or.jp/codon/. 
> 
> Spo.cut would be Schizosaccharomyces pombe.
> 
> After you run cutgextract on the cutg database from 
> ftp.ebi.ac.uk/pub/databases/cutg you should have 
> ESpodoptera_frugiperda.cut which comes from the gbinv.codons file.
> 
> The kazusa service looks interesting ... I wonder whether EMBOSS could 
> read codon usage tables directly from there on request... I will try to 
> make that work if there is enough interest.
> 
> >>----- Original Message ----- 
> >>        From: Carole Louis
> >>        To: Liste Emboss
> >>        
> >>        I extracted the CUTG database with cutgextract without any
> >>        problem but I'd like to have a more explicite name for my .cut
> >>        files ? Is it possible to obtain it ?
> 
> We are working on improving the naming and descriptions of codon usage 
> files - for EMBOSS 2.9.0. This will have to include cutgextract output.
> 
> Does anyone need the codon usage files included in the EMBOSS 
> distribution? We would like to "retire" the old ones (the long names) 
> and rename (and update) the cutg ones.
> 
> regards,
> 
> Peter Rice

-- 
Carole Louis <louis at gtptech.com>
GTP Technology
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