[EMBOSS] CUTG

[Carole Louis]

Hi Graziano and thank you.

I'm looking for the table of Spodoptera frugiperda. I thought it was
Espo.cut but this table seems to be very different from that I found on
this internet site :   http://www.kazusa.or.jp/codon/.
Does anybody know which table is the one I need ?

Thanks,
Carole


Le mar 09/03/2004 à 16:17, Graziano P. a écrit :

>  
> Hi Carol,
> not every file but most are described in the README file from
> ftp://ftp.ebi.ac.uk/pub/databases/codonusage. Below I report the list
> I am using.
>  
> Regards
> Graziano
>  
> Easn.cut  -  Aspergillus nidulans
> Eath.cut  -  Arabidopsis thaliana
> Ebly.cut  -  Hordeum vulgare (Barley)
> Ebmo.cut  -  Bombyx mori (Silk Moth)
> Ebov.cut  -  Bos taurus (Cow)
> Ebsu.cut  -  Bacillus subtilis
> Ecel.cut  -  Caenorhabditis elegans
> Echi.cut  -  Chironomus sp.
> Echk.cut  -  Gallus sp. (Chicken)
> Eddi.cut  -  Dictyostelium discoideum
> Edro.cut  -  Drosophila melanogaster
> Eeco.cut  -  Escherichia coli
> Eham.cut  -  Cricetulus sp. & Mesocricetus sp.(Hamster)
> Ehum.cut  -  Homo sapiens
> Ekpn.cut  -  Klebsiella pneumoniae
> Emac.cut  -  Macaca sp
> Emus.cut  -  Mus sp. (Mouse)
> Emze.cut  -  Zea mays (Maize)
> Emzecp.cut  -  Zea mays chloroplast (Maize)
> Eneu.cut  -  Neurospora crassa
> Engo.cut  -  Neisseria gonorrheae
> Epea.cut  -  Pisum sativum (Pea)
> Epet.cut  -  Petunia sp.
> Epfa.cut  -  Plasmodium falciparum
> Ephv.cut  -  Phaseolus vulgaris (Lima bean)
> Epot.cut  -  Solanum tuberosum (Pototoe)
> Epse.cut  -  Pseudomonas sp.
> Erab.cut  -  Oryctolagus sp. (Rabbit)
> Erat.cut  -  Rattus sp. (Rat)
> Erhm.cut  -  Rhizobium meliloti
> Eric.cut  -  Oryza sativa (Rice)
> Eshp.cut  -  Ovis sp. (Sheep)
> Eslm.cut  -  Physarum polycephalum
> Esoy.cut  -  Glycine max (Soybean)
> Esta.cut  -  Staphylococcus aureus
> Esty.cut  -  Salmonella thphimurium
> Esus.cut  -  Strongylocentrotus purpuratus
> Etob.cut  -  Nicotiana tabacum (Tobacco)
> Etobcp.cut  -  Nicotiana tabacum chloroplast (Tobacco)
> Etom.cut  -  Lycopersicon esculentum (Tomato)
> Etrb.cut  -  Trypanosoma brucei
> Ewht.cut  -  Triticum aestivum (Wheat)
> Exel.cut  -  Xenopus laevis
> Eysc.cut  -  Saccharomyces cerevisiae
> Eyscmt.cut  -  Saccharomyces cerevisiae mitochondrion
> Eysp.cut  -  Schizosaccharomyces pombe
> 
>  
> ----- Original Message ----- 
> 
>         From: Carole Louis
>         To: Liste Emboss
>         Sent: Tuesday, March 09, 2004 4:05 PM
>         Subject: [EMBOSS] CUTG
>         
>         Hi,
>         
>         I extracted the CUTG database with cutgextract without any
>         problem but I'd like to have a more explicite name for my .cut
>         files ? Is it possible to obtain it ?
>         
>         Thanks,
>         
>         -- 
>         Carole Louis <louis at gtptech.com>
>         GTP Technology 

-- 
Carole Louis <louis at gtptech.com>
GTP Technology

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