[EMBOSS] dbiflat and entret...

[Jérôme Laroche]

Try this:

entret swtest-taxon:homo

If you want to use wildcard, you type :

entret swtest-taxon:homo\*


Jérôme

Centre de bioinformatique
Pavillon Charles-Eugène-Marchand
Bureau 4233d
tél: 418-656-2131 poste 6184
fax: 418-656-7176
www.bioinfo.ulaval.ca
Le 04-03-05, à 13:36, Ted Chiang a écrit :

>
> Hi,
>
> I ran dbiflat on a swissprot flatfile with the option '-fields taxon' 
> in
> order to index the db by species.  All went well, and there were files:
>
> taxon.hit
> taxon.trg
>
> produced in addition to the division.lkp and entrynam.idx.
>
> My question is how do I now retrieve only the records that are for a 
> given
> species, ie.
>
> $ entret swtest:HOMO
> Reads and writes (returns) flatfiles entries
> Error: Database Entry 'HOMO' not found
> Error: Unable to read sequence 'swtest:HOMO'
>
>
>
> I know the dbiflat worked, because when I run
>
> $ entret swtest:*
>
> I get all the files in the database.
>
>
> Thanks for the help.
>
>
>
> -Ted
>
>
> =====================================
> Ted Chiang, Analyst
> Centre for Computational Biology
> Hospital for Sick Children, Toronto
> 416.813.7028
> tchiang at bioinfo.sickkids.on.ca
> =====================================
>