[EMBOSS] OS X transeq Error

[Stephen Rogers]

I am in the process of learning to use Emboss and have encountered an 
annoying problem.  If I use transeq or prettyseq to translate a long (6 
kB) sequence, both programs delete a single base pair from my input 
sequence around bp 2040, causing a frameshift.  I have not observed 
this problem with smaller sequences.

I am running Emboss 2.8.0-2 on a Powerbook OS X.3.3 and the 
installation was performed using Fink.  Can anyone on the list shed 
some light on this problem?  Am I limited to dealing with sequences of 
a certain length when using Emboss?  Thanks for any help!
______________________________
Stephen Rogers
University of California, San Francisco
Howard Hughes Medical Institute and
Department of Molecular and Cellular Pharmacology
N316 Genentech Hall
600 16th Street
San Francisco, CA  94107
tel: 415.476.8712
fax: 415.476.5233
email: srogers at itsa.ucsf.edu
http://itsa.ucsf.edu/~srogers/
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