[EMBOSS] protein sequence input

[chowdary manio]

hi,

I am using the emboss to make protein sequence
analysis.

I want the program "water"(smith-waterman algorithm)
to take in the characters "J","O","U" which are not
aminoacid symbols.

Can I change the code?, If so, in which file I have to
make this change, to make the program take this
desired input

Thank you,
bobby


	
		
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