[EMBOSS] External DB problems
Stefanie Lager
stefanielager at fastmail.ca
Wed Dec 1 12:58:03 UTC 2004
Hi,
In version 2.8.0 of EMBOSS I have problems to access external databases
(UniProt)using methods URL and SRSWWW. It's not a proxy problem since
app: "wget http://www.ebi.ac.uk/cgi-bin/dbfetch?db=UniProt&id=%s"
works nice.
But I can't get
DB uniprot [
type: P
format: embl
method: url
url: "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+[uniprot-AllText:%s]"
]
or
DB uniprot [
type: P
format: embl
method: srswww
url: "http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz"
]
to work. In both cases it trys for a very long time and then times out
with the message:
"Error: socket connect failed for database 'uniprot'
socket connect failed for database 'uniprot': Connection timed out"
Does anyone know what could be wrong?
Stefanie
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