[EMBOSS] GCG: FRAMEALIGN- align protein-6 frames of DNA
Lakshmanan Iyer
laxman at CGR.Harvard.edu
Fri Sep 26 15:35:04 UTC 2003
Hello,
Is there an EMBOSS equivalent of GCG:FrameAlign?
It creates an optimal alignment of the best segment of similarity (local
alignment) between a protein sequence and the codons in all possible reading
frames on a single strand of a nucleotide sequence. Optimal alignments may
include reading frame shifts.
This is a very crucial tool for the evolutionary biologists.
-thanks
-laxman
Lakshmanan Iyer, Ph. D.
Computational Biologist
Manager of Collaboration and Training
Computational Biology Group
Bauer Center for Genomics Research
Bauer Laboratory
7 Divinity Ave.
Cambridge, MA 02138
www.cgr.harvard.edu <http://www.cgr.harvard.edu>
Phone:617-384-7647
Fax: 617-495-2196
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