yann-francois.bizouerne at bayercropscience.com yann-francois.bizouerne at bayercropscience.com
Fri Oct 24 11:10:56 UTC 2003


I don't know if you could help me with the little problem I have.

I have installed your EMBOSS-GUI application on our server a few month ago. And
it works great.
Since I have installed SRS on our servern. I have mofified the emboss.default in
order to use to the SRS indexes.
Now it looks like :
       DB TREMBL [                                                                                                                                  
       methodquery: srs                                                                                                                             
       format: SWISS                                                                                                                                
       type: P                                                                                                                                      
       comment: "TREMBL (SPTREMBL + TREMBLNEW) using SRS"                                                                                           
       app: getz                                                                                                                                    
       dbalias: TREMBL                                                                                                                              
       methodall: direct                                                                                                                            
       file: "trembl.dat"                                                                                                                           
       dir: $emboss_data_dir/swall                                                                                                                  
         And that works quitr well on command line, when I need to retrieve a sequence with seqret for example.                                     
         But if I am using the EMBOSS-GUI interface I just obtain the following errror message:                                                     
            EMBOSS An error in ajfile.c at line 145: execvp ('getz -e '[TREMBL-id:Q977L9]'', NULL) failed: 'No such file or directory' Error:       
            Unable to read sequence 'TREMBL-id:Q977L9' Died: seqret terminated: Bad value for '-sequence' with -auto defined seqret exited with     
            status 1...                                                                                                                             
        Do you have a clue for the problem ?                                                                                                        
        Thanks in advance                                                                                                                           
        Best regards.                                                                                                                               

Yann-François BIZOUERNE
BioInformatic Team
BAYER CropScience
1, rue Pierre Fontaine
91058 Evry Cedex
Phone:      33-(0) 1-69-47-61-56
FAX:        33-(0) 1-69-47-61-42
E-mail:     yann-francois.bizouerne at bayercropscience.com
Intranet: http://bioinfo.evry.fr.bayercropscience/

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