[EMBOSS] question about index refseq database
Jean Mao
maoj at mail.nih.gov
Thu Oct 23 20:44:23 UTC 2003
Hi,
I have the following 2 files for refseq nucleotide and protein databases
from NCBI:
----------------------------------------------
rscu.gbff.Z GenBank flatfile view (nucleotide sequence with annotations)
rscu.gnp.Z GenPept flatfile view (protein sequence with annotations)
-----------------------------------------
When I run dbiflat, should I enter GB or REFSEQ when prompt 'Entry format'?
Also, in the .embossrc file, is the following entry correct (method=emblcd
and format=genbank)?
----------------------------------------
DB refseqnt [ type: N method: emblcd format: genbank dir:
$emboss_db_dir/refseqnt indexdir: $emboss_db_dir/refseqnt file: "*.gbff"
release: "1.0" comment: "update 23/Oct/03" ]
Any suggestion is appreciated.
Jean
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