[EMBOSS] Configuring EMBOSS to use getz
yann-francois.bizouerne at bayercropscience.com
yann-francois.bizouerne at bayercropscience.com
Wed Oct 8 15:32:55 UTC 2003
Hi,
I am trying to use the method "srs".
I am using Emboss 2.7.1 and SRS 7.1.
In my emboss.default file, I have :
DB Nrl3dGetz [
methodquery: srs
format: pir
type: P
comment: "NRL 3D using SRS"
app: getz
dbalias:NRL3D
methodall: direct
file: "*.seq"
dir: $emboss_data_dir/nrl_3d
]
When I execute the command "showdb", I obtain :
user>showdb
Displays information on the currently available databases
# Name Type ID Qry All Comment
# ==== ==== == === === =======
Nrl3dGetz P OK OK OK NRL 3D using SRS
So I looks fine. But when I try to find an entry, I just obtain a error.
user>entret Nrl3dGetz:11ASA -outfile stdout
Reads and writes (returns) flatfile entries
error: Unknown set or databank
No set or library named "Nrl3dGetz"
Error: Unable to read sequence 'Nrl3dGetz:11ASA'
Died: entret terminated: Bad value for '-sequence' and no prompt
I have read all the SRS and EMBOSS documentations related to this configuration
and I don't know where the problem is.
Do you have any clue ??
Thanks in advance.
Yann-François BIZOUERNE
BioInformatic Team
BAYER CropScience
1, rue Pierre Fontaine
91058 Evry Cedex
FRANCE
Phone: 33-(0) 1-69-47-61-56
FAX: 33-(0) 1-69-47-61-42
E-mail: yann-francois.bizouerne at bayercropscience.com
Intranet: http://bioinfo.evry.fr.bayercropscience/
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