[EMBOSS] needle output

Derek Gatherer d.gatherer at vir.gla.ac.uk
Mon Nov 17 12:28:07 UTC 2003


Hi

I am using needle like this

needle file1 file2 -gapopen 10.0 -gapextend 0.5 -out outfile.needle 
-aformat fasta

which gives me a nice FASTA-formatted file with both sequences.  However, I 
would like each sequence to be output into a separate FASTA-formatted 
file.  Is there a command line toggle that does this?

cheers
Derek




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