creation of new output fasta format

[yann-francois.bizouerne at bayercropscience.com]

Hello,

Fisrt thanks a lot for your quick response to my last mail.

Now, I am trying to create a new fasta format. The format I want to obtain : >
dbname:id |accession|organism|description
By the way I create a new function in the ajseqwrite.c (seqWriteNewFasta). I
have select the diffrent informations I want to retrieve by using the examples
of others functions.
It is working quite well. Except for the Pir and Nrl_3D databases.
Indeed for these databases, I have no database name and no organism (taxon)

 /** Database name **/
 if (ajStrLen(outseq->Db))
    (void) ajFmtPrintF (outseq->File, ">%S:", outseq->Db);
  else if (ajStrLen(outseq->Setdb))
    (void) ajFmtPrintF (outseq->File, ">%S:", outseq->Setdb);
  else
    (void) ajFmtPrintF (outseq->File, ">unk:");


 /** Organism **/
  if (ajStrLen(outseq->Tax))
    (void) ajFmtPrintF (outseq->File, "%S|", outseq->Tax);


I try to find some information about NBRF format in EMboss and the way to use
it, but I could find nothing.
Do you have a clue for me ?

Best regards


Yann-François BIZOUERNE
BioInformatic Team
BAYER CropScience
1, rue Pierre Fontaine
91058 Evry Cedex
FRANCE
Phone:      33-(0) 1-69-47-61-56
FAX:        33-(0) 1-69-47-61-42
E-mail:     yann-francois.bizouerne at bayercropscience.com
Intranet: http://bioinfo.evry.fr.bayercropscience/