dbiflat question

Marc Logghe Marc.Logghe at devgen.com
Wed May 7 10:18:13 UTC 2003


Hi all,
I feel a little dumb but I'll ask it anyhow. I seem not to succeed in
creating indices for a database using dbiflat.
As a test I just wanted to index the genbank file /data/genbank/gbest226.seq
Ok, I wanted my indices to be in /data/emboss/est
so I have run dbiflat in that folder.
dbiflat -idformat genbank -directory /data/genbank -filenames gbest226.seq
-dbname est
I added this entry to emboss.default
DB est [
   type: N
   format: genbank
   method: emblcd
   directory: /data/emboss/est
]

But, you guessed it, this did not work.
What am I doing wrong here ? What happens with the passed dbname (could not
find any file with that name after running dbiflat) ?
TIA,
marc

***********************************************************
Marc Logghe, Ph.D.
Senior Scientist
Scientific Computing Group
deVGen
Technologiepark 9
9052 Zwijnaarde
Belgium
tel: +32 (0) 9 324 24 83
fax: +32 (0) 9 324 24 25
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