multiple seqs in fasta fmt...
pmr at ebi.ac.uk
Wed Mar 19 17:43:38 UTC 2003
Vasudevan, Geetha wrote:
> Is it possible to read multiple seqs in fasta fmt to the emboss program "pepinfo"
> to produce a -goutfile for hydropathy values ?
No ... because pepinfo creates two graphs and making that work for
multiple sequence input is very tricky. This is why pepinfo only reads a
single sequence (but you can put ":id" after the filename to say which
FASTA file entry you want, of use dbifasta to index the file as a database)
it is (relatively) easy to modify pepwindow to generate hydropathy plots
or data for multiple sequences.
How many sequences do you have in mind?
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