needle: Strictly global alignment?
Peter Rice
pmr at ebi.ac.uk
Mon Jun 16 09:22:32 UTC 2003
Guy Bottu wrote:
> I did some testing and, if I am not wrong, stretcher DOES penalize terminal
> gaps.
Oops. This does seem to be true.
In that case, we do need to update the documentation, and provide the
option to switch the terminal gap penalties on/off.
We may need to consider changing the default behaviour of one of the
programs too.
Thanks for pointing it out.
Peter
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