Bug in Jemboss?

[Dr T. Carver]

Hi Martin

Thanks for your message.
I noticed this one yesterday. It will probably not display 'emma' as well.
I have made a patch available at:

ftp://ftp.uk.embnet.org/pub/EMBOSS/patchfiles/Jemboss/

There will probably be a follow up release very soon which will
incorporate the patch.

Regards
Tim Carver

HGMP-RC

On Tue, 3 Jun 2003, Martin Luetzelberger wrote:

> Dear Jemboss experts,
>
> with the new EMBOSS-2.7.0 version and the Jemboss GUI I get
> java errors (see below) when choosing some programs from the DISPLAY menu
>  i.e. prettyplot. I haven't seen this with the previous (EMBOSS-2.6.0)
> version. j2sdk1.4.1_03 is installed on my system (Mandrake Linux 9.1).
>
> Any suggestions?
>
> /Martin
>
>
>
> java.lang.NullPointerException
>         at
> org.emboss.jemboss.gui.form.SectionPanel.resolveDependents(SectionPanel.java:968)
>         at
> org.emboss.jemboss.gui.form.SectionPanel.checkDependents(SectionPanel.java:813)
>         at
> org.emboss.jemboss.gui.form.SectionPanel.<init>(SectionPanel.java:476)
>         at
> org.emboss.jemboss.gui.form.BuildJembossForm.attach(BuildJembossForm.java:348)
>         at
> org.emboss.jemboss.gui.form.BuildJembossForm.<init>(BuildJembossForm.java:124)
>         at
> org.emboss.jemboss.gui.BuildProgramMenu$5.actionPerformed(BuildProgramMenu.java:339)
>         at
> javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1786)
>         at
> javax.swing.AbstractButton$ForwardActionEvents.actionPerformed(AbstractButton.java:1839)
>         at
> javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:420)
>         at
> javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:258)
>         at javax.swing.AbstractButton.doClick(AbstractButton.java:289)
>         at
> javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:1113)
>         at
> javax.swing.plaf.basic.BasicMenuItemUI$MouseInputHandler.mouseReleased(BasicMenuItemUI.java:943)
>         at java.awt.Component.processMouseEvent(Component.java:5099)
>         at java.awt.Component.processEvent(Component.java:4896)
>         at java.awt.Container.processEvent(Container.java:1569)
>         at java.awt.Component.dispatchEventImpl(Component.java:3614)
>         at java.awt.Container.dispatchEventImpl(Container.java:1627)
>         at java.awt.Component.dispatchEvent(Component.java:3476)
>         at
> java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:3483)
>         at
> java.awt.LightweightDispatcher.processMouseEvent(Container.java:3198)
>         at
> java.awt.LightweightDispatcher.dispatchEvent(Container.java:3128)
>         at java.awt.Container.dispatchEventImpl(Container.java:1613)
>         at java.awt.Window.dispatchEventImpl(Window.java:1606)
>         at java.awt.Component.dispatchEvent(Component.java:3476)
>         at java.awt.EventQueue.dispatchEvent(EventQueue.java:456)
>         at
> java.awt.EventDispatchThread.pumpOneEventForHierarchy(EventDispatchThread.java:201)
>         at
> java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:151)
>         at
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:145)
>         at
> java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:137)
>         at java.awt.EventDispatchThread.run(EventDispatchThread.java:100)
>
>
> --
> Martin Lützelberger, PhD
> Department of Molecular Biology
> University of Århus
> C.F. Møllers Allé, Bldg. 130
> DK-8000 Aarhus C
> Denmark
> --
> Phone:  +45 26635544
> Fax:    +45 86196500
> Www:    http://www.rna.dk
> E-mail: ml at mb.au.dk
> --
>