Runtime error...

[Dr T. Carver]

Hi Yosep

These errors look like you may not have used the install script provided
(EMBOSS-2.7.1/jemboss/utils/install-jemboss-server.sh) with a fresh
download of EMBOSS-2.7.1. This should have changed the values in
$EMBOSS_INSTALL/share/EMBOSS/jemboss/resources/jemboss.properties to
reflect the directory structure for your installation.

If you did not use the install script, I recommend you try using that. If
you did then you can try editing:
$EMBOSS_INSTALL/share/EMBOSS/jemboss/resources/jemboss.properties

and look at the description of the variables at:
http://www.hgmp.mrc.ac.uk/Software/EMBOSS/Jemboss/install/properties.html

Hope this helps.
Regards
Tim Carver

HGMP-RC

On Wed, 23 Jul 2003, Yosep wrote:

>
> Hello!
>
> I have finally & succesfully instally Jemboss on my NetBSD machine,
> meaning I didn't get any installing error.  Now, I followed the online
> help for setting up the environment variables and so on for the Standalone
> Mode.  However, I get this error message when I run the "runJemboss.csh"
> script.
>
> yosep at typha: {599} ./runJemboss.csh
> [1] 6526
> yosep at typha: {600} Standalone mode
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> Font specified in font.properties not found
> [--symbol-medium-r-normal--*-%d-*-*-p-*-adobe-fontspecific]
> /packages/emboss/STABLE/bin/wossname -colon -auto
> RunEmbossApplication Error executing: /packages/emboss/STABLE/bin/wossname -colon -auto
> java.lang.NullPointerException
>         at org.emboss.jemboss.programs.RunEmbossApplication.isProcessStdout(RunEmbossApplication.java:71)
>         at org.emboss.jemboss.gui.BuildProgramMenu$1.construct(BuildProgramMenu.java:231)
>         at org.emboss.jemboss.gui.SwingWorker$2.run(SwingWorker.java:127)
>         at java.lang.Thread.run(Thread.java:479)
>
> How can I fix these errors?
> Any help would be greatly appreciated.
>
>
> =============
>    |\/\/|   |  Yosep Kim
>    |,,,,|   |  NMSU Computer Lab Assistant
>    |    |   |  Computer Science, B.S.
>   [|^  ^|]  |  New Mexico State Unversity
>     \__/    |  http://web.nmsu.edu/~yoskim
> =============
>  PHIL 4:13
>