PDB files

[Dr J.C. Ison]

Anand

It sounds like you're trying to model the 3D structure of
a DNA sequence.  I'm afraid there's nothing in EMBOSS
for that.

Cheers

J.

Anand Rathi wrote:

> Dear Embosians,
>
>                         Apologies for being a little OT, but can anyone
> point me to a tool that can convert a DNA sequence of ~20kb into a pdb
> file ? I have tried Model.it server located at
> http://www3.icgeb.trieste.it/~dna/model_it.html but it maxs out at 700
> bp. Another URL http://tourney.psc.edu/cgi-bin/pdbtext.pl doesn't seem
> to be working correctly.
>
>                       Any help/suggestions in this direction will be
> appreciated.
>
> Thanks,
> Anand.

--
Jon C. Ison, PhD
Bioinformatics Applications Group
UK MRC Human Genome Mapping Project Resource Centre
Hinxton, Cambridge, CB10 1SB, UK
E-mail : jison at hgmp.mrc.ac.uk
Tel    : 01223 49-4548
HGMP-RC: http://www.hgmp.mrc.ac.uk/
EMBOSS : http://www.hgmp.mrc.ac.uk/Software/EMBOSS/