How to extract feature protein_id out of GCG genbank databases?
Stephan.Hurling at evotecoai.com
Stephan.Hurling at evotecoai.com
Fri Feb 21 16:15:44 UTC 2003
Hello,
I would like to index GCG genebank databases in a way, that I will also
index the protein id, stored
as an additional information in the features section for a sequence:
GCG database entry:
...
COMMENT On Oct 14, 1999 this sequence version replaced ...
FEATURES Location/Qualifiers
source 1. .1839
/organism="Homo sapiens"
CDS 165. .1448
..........
---> /protein_id="AAC123456"
...
Current emboss entrys, dumped with "seqret -osformat debug" for a sequence
show no
available features:
...
Features: 'No'
...
Can someone give ma a hint, how to include the protein id in my indices?
How do I have
to change the call to "dbigcg"? I would like to be able to use "whichdb
'protein_id' "for
locating the specific protein in the connected databases.
Thanks in advance.
All the best,
Stephan
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