[EMBOSS] Re: Problem writing sequence files

Kim Rutherford kmr at sanger.ac.uk
Thu Aug 21 11:22:34 UTC 2003


On Wed, 20 Aug 2003 14:28:30 +0100, Kim Rutherford wrote:

> Hi.  I'm trying to write a sequence to a named file.  I tried this:

>       AjPFile seqout_file = ajFileNewOut(seqout_name);
>       AjPSeqout named_seqout = ajSeqoutNewF(seqout_file);

>       AjPStr format_str = ajStrNew();
>       ajStrAssC(&format_str, "embl");

>       ajSeqOutSetFormat(named_seqout, format_str);

>       ajSeqWrite(named_seqout, subseq);


> I get a segmentation fault ...

I've realised that I don't need to do any of this in my application, I
just need to add -ossingle to the command line to get the functionality
I need.  Sorry for the waste of time.

Kim.



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