[EMBOSS] Question about Emma using emboss-GUI

[Dr T. Carver]

Hi Jean

Which EMBOSS-GUI are you testing?
If you are using Jemboss you will need to add the path to clustalw to the
jemboss.properties file (in $EMBOSS-INSTALL/share/EMBOSS/jemboss). The
format of this file is described at:

http://www.hgmp.mrc.ac.uk/Software/EMBOSS/Jemboss/install/properties.html

-so add it to the embossPath variable and if you are using a client-server
installation re-start tomcat with the 'tomstart' script provided.
Regards
Tim Carver

HGMP-RC


On Fri, 8 Aug 2003, Jean Mao wrote:

> Hi,
> I installed the Emboss-GUI and are testing it. I got an error message when I tried emma using the GUI web interface. The error message says:
> EMBOSS An error in ajsys.c at line 360: cannot find program 'clustalw' emma exited with status 1...
> However, I got no error when I tried emma on the command line. Would you help me? Thank you very much.
>
> -------------------------------------------------------------------
> Jean Mao
> Helix Systems
> Bldg 12B, Rm 2N207
> National Institutes of Health
> Bethesda, MD 20895
> Email:maoj at helix.nih.gov
> ------------------------------------------------------------------