entret bug or feature ?
Marc Logghe
Marc.Logghe at devgen.com
Tue Apr 29 10:27:39 UTC 2003
Hi all,
Thanks to Simon Andrews I had a new toy to play with: entret.
And I have already a question about that: why is a seqret returning
something and entret not.
I tried the following with a local ipi database, which is actually a blast
database:
seqret ipi:ENSP00000289136 -debug
and
entret ipi:ENSP00000289136 -debug
Like I mentioned I don't get anything back from entret. Why is that ? I'll
include both debug files
<<seqret.dbg>> <<entret.dbg>>
In emboss.default the ipi database is defined as:
DB ipi [
type: P
format: ncbi
method: app
app: "fastacmd -d ipi -s %s"
]
Thanks,
ML
***********************************************************
Marc Logghe, Ph.D.
Senior Scientist
Scientific Computing Group
deVGen
Technologiepark 9
9052 Zwijnaarde
Belgium
tel: +32 (0) 9 324 24 88
fax: +32 (0) 9 324 24 25
***********************************************************
-------------- next part --------------
A non-text attachment was scrubbed...
Name: seqret.dbg
Type: application/octet-stream
Size: 9517 bytes
Desc: not available
URL: <http://lists.open-bio.org/pipermail/emboss/attachments/20030429/98bc181c/attachment-0002.obj>
-------------- next part --------------
A non-text attachment was scrubbed...
Name: entret.dbg
Type: application/octet-stream
Size: 8704 bytes
Desc: not available
URL: <http://lists.open-bio.org/pipermail/emboss/attachments/20030429/98bc181c/attachment-0003.obj>
More information about the EMBOSS
mailing list