database help
Thomas Keller
kellert at ohsu.edu
Thu Apr 3 21:43:21 UTC 2003
Greetings,
The sysadmin for the machine with GCG installed, was kind enough to
allow me to mount the gcg databases maintained at my institution. This
should save me a lot of headaches, yet allow me the convenience of
using them with EMBOSS on my machine. But I am unsure how to make them
available to EMBOSS. Is there some general documentation on database
formats and the steps required for use with emboss? The database
documentation doesn't cover this particular case.
I'm unsure, for example, if I would put "method: gcg" for all of these?
would I need to run formatdb on the blast dbs? general stuff like that.
The directory structure looks like this:
gcgnrl3d
gcgswissprot
gcgsrs
gcgpir
gcgembl
gcggenpept
gcgblast
est_human_00.nsq
est_human_00.nsi
est_human_00.nsd
est_human_00.nin
est_human_00.nhr
...
gcgpfam
gcggenbank
gcggbtags
gcgpfam.org
gcgsptrembl
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