translate tools

[Rodrigo Lopez]

Ah! You might want to have a look at checktrans as well.

R:)

> -----Original Message-----
> From: owner-emboss at hgmp.mrc.ac.uk
> [mailto:owner-emboss at hgmp.mrc.ac.uk]On Behalf Of Zhiqiang Ye
> Sent: 03 April 2003 09:53
> To: emboss at embnet.org
> Subject: translate tools
>
>
> Dear all，
>      I have a large set of mRNAs,cDNAs,cds to translate, but each
> sequence has different reading frame.
> So I have to translate it in all 6 frames and see which is the
> best.I have so many sequences that I cannot
> do this one by one. Is there any program in emboss which can
> translate nucleic sequence in 6 frames and choose
> the best one as output? Transeq doesn't seem to work with this.
> 	Thanks in advance!
> 　　
>
> 　　　　　　　　
> Best Regards!
>
> 　　　　　　　　　　　　　　Zhiqiang Ye
> 　　　　　　　　　　　　　　　　　2003-04-03
>
> ###############################################################
> Zhiqiang Ye, Ph. D candidate, Major in Bioinformatics
> Center of BioInformatics, College of Life Scicences,
> Peking University, Beijing, PR China 100871
> Tel: 	+86 10 6275 6730
> ###############################################################
>
>
>