Extractfeat options

[Burke Squires]

Hello All,

I have having a bit of trouble extracting just genes form a Genbank file. I
have tried the obviously options to no avail. I want to get JUST the gene
information but I always get gene and CDS as below. How do I do that?

Additionally, can I get the gene name instead of the stuff below?

Thanks!

Burke


>NC_001806_513_1259 [gene] Human herpesvirus 1, complete genome.
atggcccgccgccgccgccatcgcggcccccgccgcccccggccgcccgggcccacgggc
gccgtcccaaccgcacagtcccaggtaacctccacgcccaactcggaacccgcggtcagg
agcgcgcccgcggccgccccgccgccgccccccgccggtgggcccccgccttcttgttcg
ctgctgctgcgccagtggctccacgttcccgagtccgcgtccgacgacgacgatgacgac
gactggccggacagccccccgcccgagccggcgccagaggcccggcccaccgccgccgcc
ccccggccccggcccccaccgcccggcgtgggcccggggggcggggctgacccctcccac
cccccctcgcgccccttccgccttccgccgcgcctcgccctccgcctgcgcgtcaccgcg
gagcacctggcgcgcctgcgcctgcgacgcgcgggcggggagggggcgccggagcccccc
gcgacccccgcgacccccgcgacccccgcgacccccgcgacccccgcgcgggtgcgcttc
tcgccccacgtccgggtgcgccacctggtggtctgggcctcggccgcccgcctggcgcgc
cgcggctcgtgggcccgcgagcgggccgaccgggctcggttccggcgccgggtggcggag
gccgaggcggtcatcgggccgtgcctggggcccgaggcccgtgcccgggccctggcccgc
ggagccggcccggcgaactcggtctaa
>NC_001806_513_1259 [CDS] Human herpesvirus 1, complete genome.
atggcccgccgccgccgccatcgcggcccccgccgcccccggccgcccgggcccacgggc
gccgtcccaaccgcacagtcccaggtaacctccacgcccaactcggaacccgcggtcagg
agcgcgcccgcggccgccccgccgccgccccccgccggtgggcccccgccttcttgttcg
ctgctgctgcgccagtggctccacgttcccgagtccgcgtccgacgacgacgatgacgac
gactggccggacagccccccgcccgagccggcgccagaggcccggcccaccgccgccgcc
ccccggccccggcccccaccgcccggcgtgggcccggggggcggggctgacccctcccac
cccccctcgcgccccttccgccttccgccgcgcctcgccctccgcctgcgcgtcaccgcg
gagcacctggcgcgcctgcgcctgcgacgcgcgggcggggagggggcgccggagcccccc
gcgacccccgcgacccccgcgacccccgcgacccccgcgacccccgcgcgggtgcgcttc
tcgccccacgtccgggtgcgccacctggtggtctgggcctcggccgcccgcctggcgcgc
cgcggctcgtgggcccgcgagcgggccgaccgggctcggttccggcgccgggtggcggag
gccgaggcggtcatcgggccgtgcctggggcccgaggcccgtgcccgggccctggcccgc
ggagccggcccggcgaactcggtctaa
>NC_001806_2261_2317 [gene] Human herpesvirus 1, complete genome.
atggagccccgccccggagcgagtacccgccggcctgagggccgcccccagcgcgag
>NC_001806_3083_3749 [gene] Human herpesvirus 1, complete genome.
cccgccccggatgtctgggtgtttccctgcgaccgagacctgccggacagcagcgactct
gaggcggagaccgaagtgggggggcggggggacgccgaccaccatgacgacgactccgcc
tccgaggcggacagcacggacacggaactgttcgagacggggctgctggggccgcagggc
gtggatgggggggcggtctcgggggggagccccccccgcgaggaagaccccggcagttgc
gggggcgccccccctcgagaggacggggggagcgacgagggcgacgtgtgcgccgtgtgc
acggatgagatcgcgccccacctgcgctgcgacaccttcccgtgcatgcaccgcttctgc
atcccgtgcatgaaaacctggatgcaattgcgcaacacctgcccgctgtgcaacgccaag
ctggtgtacctgatagtgggcgtgacgcccagcgggtcgttcagcaccatcccgatcgtg
aacgacccccagacccgcatggaggccgaggaggccgtcagggcgggcacggccgtggac
tttatctggacgggcaatcagcggttcgccccgcggtacctgaccctgggggggcacacg
gtgagggccctgtcgcccacccacccggagcccaccacggacgaggatgacgacgacctg
gacgacg


-- 
Burke Squires
Bioinformatics
MacroGenics, Inc.
Dallas, TX