report formats (-rformat)

Wiepert, Mathieu Wiepert.Mathieu at mayo.edu
Fri Sep 20 17:15:20 UTC 2002


Hi,

I was wondering how -rformat works.  I was doing a fuzzpro search, and got formats with many header lines.  The output was

SeqName	Start	End	Score	Mismatch
NU5M_RHIUN	150	157	8	.
SeqName	Start	End	Score	Mismatch
NU5M_FELCA	150	157	8	.
SeqName	Start	End	Score	Mismatch
TBB2_NEIMB	572	579	8	.
...

But I was hoping for
SeqName	Start	End	Score	Mismatch
NU5M_RHIUN	150	157	8	.
NU5M_FELCA	150	157	8	.
TBB2_NEIMB	572	579	8	.
...

fuzzpro -sequence swissprot:* -rformat -pattern [MF]-[LS]-[F]-[LPA]-[GL]-X-[GAY]-X -mismatch 0 -outfile fuzzpro.excel 

Did I do something wrong, or are my expectations wrong.  It wasn't too clear to me from the formats page how that might work.

If this has been asked 100 times before, sorry!  Is there an archive I can search?  Googling didn't come up with much.

-Mat



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