report formats (-rformat)
Wiepert, Mathieu
Wiepert.Mathieu at mayo.edu
Fri Sep 20 17:15:20 UTC 2002
Hi,
I was wondering how -rformat works. I was doing a fuzzpro search, and got formats with many header lines. The output was
SeqName Start End Score Mismatch
NU5M_RHIUN 150 157 8 .
SeqName Start End Score Mismatch
NU5M_FELCA 150 157 8 .
SeqName Start End Score Mismatch
TBB2_NEIMB 572 579 8 .
...
But I was hoping for
SeqName Start End Score Mismatch
NU5M_RHIUN 150 157 8 .
NU5M_FELCA 150 157 8 .
TBB2_NEIMB 572 579 8 .
...
fuzzpro -sequence swissprot:* -rformat -pattern [MF]-[LS]-[F]-[LPA]-[GL]-X-[GAY]-X -mismatch 0 -outfile fuzzpro.excel
Did I do something wrong, or are my expectations wrong. It wasn't too clear to me from the formats page how that might work.
If this has been asked 100 times before, sorry! Is there an archive I can search? Googling didn't come up with much.
-Mat
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