infoseq db name in fasta file
Peter Rice
peter.rice at uk.lionbioscience.com
Fri Sep 6 14:54:17 UTC 2002
David.Bauer at SCHERING.DE wrote:
> infoseq can read fasta file with a database name in front of the identifier.
>
>>database:name accession description
>
> Is there a way to preserve the database name on output?
> In the USA and NAME colums appears only the name and not the database.
Tricky ... The USA is of course the filename for EMBOSS.
If you 'cheat' with -sdb database the USA will be database-id:name
The real problem is that EMBOSS cannot easily know "database" is valid.
Any suggestions for how this could work?
Peter
--
------------------------------------------------
Peter Rice, LION Bioscience Ltd, Cambridge, UK
peter.rice at uk.lionbioscience.com +44 1223 224723
More information about the EMBOSS
mailing list