question about plotcon

Guy Bottu gbottu at
Fri Sep 6 07:39:00 UTC 2002

from : BEN

	Dear colleagues,
Does someone know how plotcon computes the average similarity score ? When I 
give as input a 5 protein alignment and a similarity matrix that scores 
identical amino acid pairs +1, the plotcon graphic raises nowhere above +0.2
Is this O.K. ?

	Guy Bottu

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