transeq/fuzzpro on large sequences

[Thomas Laurent]

David Mathog wrote:
 
> That said, it might make even more sense in terms of performance, if not
> in terms of
> clean functional separation, if fuzzpro could translate for itself.

Hi David,
I'm far from being an EMBOSS expert, and I perheaps misunderstood this
part of your mail, but isn't Fuzztran doing that already ?
I mean instead of piping transeq to fuzzpro, fuzztran translate the dna
sequence then search for the pattern. It seems doing the same job.
But, I perheaps missed something.

Cheers,

Thomas

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Thomas Laurent
LION Bioscience