problems with dbiblast

Tõnu Margus tmargus at ebc.ee
Tue Jun 4 14:46:05 UTC 2002


Hi,

I have problems with blast database formating for emboss.
dbiblast gives an unexpected error. It starts to look file swissprot.phr.pin
not swissprot.pin. Waht could be a reason and how to overcome?

here is program output form screen

tmargus at kobra:blast$ dbiblast
Index a BLAST database
Database name: swissprot
Database directory [.]: 
Wildcard database filename [swissprot]: swissprot*
Release number [0.0]: 40
Index date [00/00/00]: 
         N : nucleic
         P : protein
         ? : unknown
Sequence type [unknown]: P
         1 : wublast and setdb/pressdb
         2 : formatdb
         0 : unknown
Blast index version [unknown]: 2

   EMBOSS An error in dbiblast.c at line 640:
 cannot open ./swissprot.phr table file ./swissprot.phr.pin



Sincerely Yours
Tõnu Margus


Estonian Biocentre 
Riia 23
Tartu 51010
Estonia

E-mail  tmargus at ebc.ee
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