Instalation and D'd problem.

Sebastian Bassi sebastian.bassi at ar.advantaseeds.com
Mon Jul 29 08:29:00 UTC 2002


     Hi,
     
     I?ve found 2 problems with EMBOSS. I?ve installed this in the past under 
     Solaris 7 (Sun) and several flavors of Linux.
     Now I?m trying to compile it under Red Hat 6.2 server. The configure 
     stage goes by OK, but when I try to compile I get:
     
     
     gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" 
     -DPACKAGE_
     STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"EMBOSS\" 
     -DVERSION=\"2.4.1\" -D
     STDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 
     -DHAVE
     _STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 
     -DHAVE_STDI
     NT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DX_DISPLAY_MISSING=1 
     -DHAVE_DIRENT_H=
     1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1 
     -DHAVE_U
     NISTD_H=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1 
     -DHAVE_WORKING_FOR
     K=1 -DHAVE_VPRINTF=1 -DHAVE_MEMMOVE=1 -DX_DISPLAY_MISSING=1 -DHAVE_LIBM=1 
      -I. -
     I. -I../nucleus -I../ajax -I../plplot  -I/usr/local -DNO_AUTH  -g -O2 -c 
     `test -
     f 'abiview.c' || echo './'`abiview.c
     /bin/sh ../libtool --mode=link gcc  -g -O2   -o abiview  abiview.o 
     ../nucleus/li
     bnucleus.la ../ajax/libajaxg.la ../ajax/libajax.la ../plplot/libplplot.la 
     -lX11
      -lm
     mkdir .libs
     gcc -g -O2 -o .libs/abiview abiview.o  ../nucleus/.libs/libnucleus.so 
     ../ajax/.l
     ibs/libajaxg.so ../ajax/.libs/libajax.so ../plplot/.libs/libplplot.so 
     -lX11 -lm
     -Wl,--rpath -Wl,/usr/local/lib
     /usr/bin/ld: cannot find -lX11
     collect2: ld returned 1 exit status
     make[2]: *** [abiview] Error 1
     make[2]: Leaving directory `/home/sbassi/EMBOSS-2.4.1/emboss'
     make[1]: *** [all-recursive] Error 1
     make[1]: Leaving directory `/home/sbassi/EMBOSS-2.4.1/emboss'
     make: *** [all-recursive] Error 1
     [root at pescadilla EMBOSS-2.4.1]#
     
     
     Perhaps it?s something related to graphics, since is a server machine, X 
     is not installed. Is X needed in order to compile it? I really need to 
     use only text based programs from EMBOSS.
     If there?s a program witch needs X, I would like not to compile it but 
     keep on working with the command line (CL) ones.
     Now, it seems that I can?t compile even CL programs because I don?t have 
     X installed. Maybe I?m wrong.
     
     I also reporting that EMNU program is not where the EMBASSY web page 
     states it is: ftp://ftp.uk.embnet.org/pub/EMBOSS/EMNU-1.0.4.tar.gz
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