Instalation and D'd problem.
Sebastian Bassi
sebastian.bassi at ar.advantaseeds.com
Mon Jul 29 08:29:00 UTC 2002
Hi,
I?ve found 2 problems with EMBOSS. I?ve installed this in the past under
Solaris 7 (Sun) and several flavors of Linux.
Now I?m trying to compile it under Red Hat 6.2 server. The configure
stage goes by OK, but when I try to compile I get:
gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\"
-DPACKAGE_
STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"EMBOSS\"
-DVERSION=\"2.4.1\" -D
STDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1
-DHAVE
_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1
-DHAVE_STDI
NT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DX_DISPLAY_MISSING=1
-DHAVE_DIRENT_H=
1 -DSTDC_HEADERS=1 -DHAVE_UNISTD_H=1 -DGETPGRP_VOID=1 -DHAVE_STRFTIME=1
-DHAVE_U
NISTD_H=1 -DHAVE_FORK=1 -DHAVE_VFORK=1 -DHAVE_WORKING_VFORK=1
-DHAVE_WORKING_FOR
K=1 -DHAVE_VPRINTF=1 -DHAVE_MEMMOVE=1 -DX_DISPLAY_MISSING=1 -DHAVE_LIBM=1
-I. -
I. -I../nucleus -I../ajax -I../plplot -I/usr/local -DNO_AUTH -g -O2 -c
`test -
f 'abiview.c' || echo './'`abiview.c
/bin/sh ../libtool --mode=link gcc -g -O2 -o abiview abiview.o
../nucleus/li
bnucleus.la ../ajax/libajaxg.la ../ajax/libajax.la ../plplot/libplplot.la
-lX11
-lm
mkdir .libs
gcc -g -O2 -o .libs/abiview abiview.o ../nucleus/.libs/libnucleus.so
../ajax/.l
ibs/libajaxg.so ../ajax/.libs/libajax.so ../plplot/.libs/libplplot.so
-lX11 -lm
-Wl,--rpath -Wl,/usr/local/lib
/usr/bin/ld: cannot find -lX11
collect2: ld returned 1 exit status
make[2]: *** [abiview] Error 1
make[2]: Leaving directory `/home/sbassi/EMBOSS-2.4.1/emboss'
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory `/home/sbassi/EMBOSS-2.4.1/emboss'
make: *** [all-recursive] Error 1
[root at pescadilla EMBOSS-2.4.1]#
Perhaps it?s something related to graphics, since is a server machine, X
is not installed. Is X needed in order to compile it? I really need to
use only text based programs from EMBOSS.
If there?s a program witch needs X, I would like not to compile it but
keep on working with the command line (CL) ones.
Now, it seems that I can?t compile even CL programs because I don?t have
X installed. Maybe I?m wrong.
I also reporting that EMNU program is not where the EMBASSY web page
states it is: ftp://ftp.uk.embnet.org/pub/EMBOSS/EMNU-1.0.4.tar.gz
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