Peter Rice
peter.rice at uk.lionbioscience.com
Thu Jul 25 15:45:14 UTC 2002
Sanjib Chatterjee wrote:
>
> sir,
> I want to know whether I can run the programme
> "cpgreport" for a sequence of length 50 MB.
Yes! EMBOSS will read any sequence length, it is limited by the memory on
the machine.
By default, EMBOSS reads the input sequence into a buffer while gussing the
format. If you specify the format in the USA or on the command line it will
use less memory for a very large sequence.
For example:
% cpgreport fasta::big.seq
% cpgreport big.seq -sf fasta
regards,
Peter Rice
--
------------------------------------------------
Peter Rice, LION Bioscience Ltd, Cambridge, UK
peter.rice at uk.lionbioscience.com +44 1223 224723
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