redata/rebaseextract bug ?
K. Arun
karbak at cmu.edu
Tue Jan 22 06:01:17 UTC 2002
Hello,
I recently compiled EMBOSS 2.2.0 (with the patched files
mentioned earlier on this list) on a Debian Linux machine, and have
been using it (mostly) without problems for a few days now. I
encountered an interesting anomaly this evening while indexing and
checking REBASE release 201.
------------
$ redata EcoRI
Search REBASE for enzyme name, references, suppliers etc.
Output file [outfile.redata]: stdout
EcoRI
Recognition site is ESCHERICHIACOLIRY leaving sticky ends
Cut positions 5':0 3':0 [5':0 3':0]
Organism: G^AATTC
Methylated: R.N. Yoshimori
Source: 3(6)
-snip-
------------
(organism and recognition site are interchanged)
I've been having other problems with 'restrict', but this one
seems to require fixing first. Am I doing something wrong ? I
extracted REBASE 201 (the withrefm.201 file) with rebaseextract as
indicated in the documentation.
Thanks,
-arun
--
arun krishnaswamy <karbak at myrealbox.com> <karbak at acm.org>
biological sciences, mellon institute, carnegie mellon university
PGP: 0x5606B2B1 GPG: 1024D/C75FD05C
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