Antwort: Databases

[David.Bauer at SCHERING.DE]

Hi Judit,

you need the databases if you want to get sequences directly from there.
In /usr/local/share/EMBOSS you find a emboss.default.template.
This must be copied to emboss.default and include definitions for databases
you have installed locally.
There is a nice administration guide from David Martin at
http://www.uk.embnet.org/Software/EMBOSS/Doc/Admin_guide/admin.pdf
which has an extensive chapter on how to handle databases with emboss.

David.



|--------+--------------------------->
|        |          Judit Lucia Gomez|
|        |          <jgomez at rz.uni-po|
|        |          tsdam.de>        |
|        |          Gesendet von:    |
|        |          owner-emboss at hgmp|
|        |          .mrc.ac.uk       |
|        |                           |
|        |                           |
|        |          14.02.02 14:02   |
|        |                           |
|--------+--------------------------->
  >-----------------------------------------------------------------------|
  |                                                                       |
  |                                                                       |
  |                                                                       |
  |An:    emboss at embnet.org                                               |
  |Kopie:                                                                 |
  |Thema: Databases                                                       |
  >-----------------------------------------------------------------------|



I installed EMBOSS on my computer, and when I typed  _%showdb_ no one db
was displayed, I would like to know if I must install also the
databases, or if is any chance to run EMBOSS programs making a link with
the databases.
Regards
Judith Gomez

==========================
 Judith Lucia Gomez
 Doktorandin
 Universität Potsdam
 Institut für Biochemie und Biologie
 AG Müller-Röber
 Arbeitsgruppe Molekularbiologie
 Karl-liebknecht-Str. 24/25  Haus 20, 1.O4
 14476
 Golm
 Germany