Problem with png driver for emboss
David Martin
dmartin at bioinformatics.msiwtb.dundee.ac.uk
Wed Feb 13 15:28:04 UTC 2002
On Wed, 13 Feb 2002, Johanne Duhaime wrote:
> Hi
>
> I have problem installing the PNG stuff in order to use graphics in
> EMBOSS.
>
> I have tried to build gd on solaris 2.6 and could not succeed. There is
> a message about : gdImageCreateFromPng.
> Would you mind to help? I had spent several hours on compiling Png
> stuff. I would appreciate very much your help.
Last time I did anything on Solaris was at ISMB2001, and it worked
flawlessly installing the packages from the solaris freeware site.
You may need the libPNG and libz installed before compiling GD.
..d
>
> Following is the error message, the include and library and finally the
> makefile. Thank in advance.
>
> mercure{root}48: make
> gcc -I. -I/usr/include/freetype2 -I/usr/include/X11
> -I/usr/X11R6/include/X11 -I/usr/local/include
> -I/opt/sasircm/drivers/drivers/include pngtogd.o -o pngtogd -L.
> -L/usr/local/lib -L/usr/lib/X11 -L/usr/X11R6/lib
> -L/opt/sasircm/drivers/drivers/lib -L/usr/ucblib -lgd -lpng -lz -lm
> Undefined first referenced
> symbol in file
> gdImageCreateFromPng pngtogd.o
> ld: fatal: Symbol referencing errors. No output written to pngtogd
> *** Error code 1
> make: Fatal error: Command failed for target `pngtogd'
>
>
>
>
>
> Librairies and include:
> total 466
> drwxrwxrwx 2 sasircm sequence 512 Feb 8 15:10 ./
> drwxrwxrwx 4 sasircm sequence 512 Feb 8 14:54 ../
> -rw-r--r-- 1 sasircm sequence 133396 Feb 11 16:32 png.h
> -rw-r--r-- 1 sasircm sequence 39838 Feb 11 16:32 pngconf.h
> -rw-r--r-- 1 sasircm sequence 7810 Feb 8 14:54 zconf.h
> -rw-r--r-- 1 sasircm sequence 40898 Feb 8 14:54 zlib.h
> mercure{root}50: l /opt/sasircm/drivers/drivers/lib
> total 1058
> drwxrwxrwx 2 sasircm sequence 512 Feb 11 16:32 ./
> drwxrwxrwx 4 sasircm sequence 512 Feb 8 14:54 ../
> -rw-rw-rw- 1 sasircm sequence 205316 Feb 11 16:32 libpng.a
> lrwxrwxrwx 1 root other 11 Feb 11 16:32 libpng.so ->
> libpng.so.3*
> lrwxrwxrwx 1 root other 17 Feb 11 16:32 libpng.so.3 ->
> libpng.so.3.1.2.1*
> -rwxr-xr-x 1 sasircm sequence 229816 Feb 11 16:32 libpng.so.3.1.2.1*
>
> -rwxr-xr-x 1 sasircm sequence 70488 Feb 8 14:54 libz.a*
> mercure{root}51:
>
>
> Makefile
>
> mercure{root}59: more Makefile
> #Depending on your system, you will need to modify this makefile.
>
> #If you do not have gcc, change the setting for COMPILER, but you must
> #use an ANSI standard C compiler (NOT the old SunOS 4.1.3 cc
> #compiler; get gcc if you are still using it).
> COMPILER=gcc
>
> #If the ar command fails on your system, consult the ar manpage
> #for your system.
> AR=ar
>
> #If you don't have FreeType, libjpeg and/or Xpm installed, including the
>
> #header files, uncomment this (default). You really must install
> #libpng and zlib to get anywhere if you wish to create PNG images.
> #Mis la ligne suivante en commentaire
> #CFLAGS=-O -DHAVE_LIBPNG -DHAVE_LIBJPEG
>
> #If you do have FreeType, libjpeg and/or Xpm fully installed, uncomment
> a
> #variation of this and comment out the line above. See also LIBS below.
> #CFLAGS=-O -DHAVE_LIBXPM -DHAVE_LIBPNG -DHAVE_LIBJPEG \
> # -DHAVE_LIBFREETYPE -DHAVE_LIBTTF
>
> #To use the old FreeType 1.x library, add this additional #define
> #to the line above
> #-DHAVE_LIBTTF
>
> #If you don't have FreeType Xpm fully installed, uncomment this
> #(default).
>
> #PLEASE NOTE: YOU MAY HAVE TO JUGGLE THE ORDER OF THE LIBRARIES.
> #Some systems are very picky about link order. They don't all agree
> #on the right order, either.
>
> LIBS=-lgd -lpng -lz -lm
>
> #If you do have FreeType, JPEG and/or Xpm fully installed, uncomment a
> #variation of this and comment out the line above. Note that
> #Xpm requires X11. See also CFLAGS above.
>
> #LIBS=-lgd -lpng -lz -ljpeg -lfreetype -lm -lttf
>
> #Note: for Freetype 1.x, use DHAVE_LIBTTF and -lttf instead.
>
> #Typical install locations for freetype, zlib, xpm, libjpeg and libpng
> header
> #files. If yours are somewhere else, change this. -I. is important to
> #ensure that the version of gd you are installing is used, and not an
> #older release in your directory tree somewhere.
>
> INCLUDEDIRS=-I. -I/usr/include/freetype2 -I/usr/include/X11
> -I/usr/X11R6/include/X11 -I/usr/local/include -I/opt/sasircm/drivers/dri
>
> vers/include
>
> #Typical install locations for freetype, zlib, xpm and libpng libraries.
>
> #If yours are somewhere else, other than a standard location
> #such as /lib or /usr/lib, then change this. Be sure to keep
> #-L. as this allows the gd library itself to be found.
> #Put -L. first so that old versions of the gd library elsewhere
> #on your system can't cause conflicts while building a new one.
> #This line shouldn't hurt if you don't actually have some of the
> #optional libraries and directories.
>
> #LIBDIRS=-L. -L/usr/local/lib -L/usr/lib/X11 -L/usr/X11R6/lib
> -L/opt/sasircm/drivers/drivers/lib -L/opt/sasircm/drivers/libpng
> LIBDIRS=-L. -L/usr/local/lib -L/usr/lib/X11 -L/usr/X11R6/lib
> -L/opt/sasircm/drivers/drivers/lib -L/usr/ucblib
> #Location where libgd.a should be installed by "make install".
> #INSTALL_LIB=/usr/local/lib
> INSTALL_LIB=/opt/sasircm/drivers/drivers/lib
>
> #Location where .h files should be installed by "make install".
> #INSTALL_INCLUDE=/usr/local/include
> INSTALL_INCLUDE=/opt/sasircm/drivers/drivers/include
>
> #Location where useful non-test programs should be installed by "make
> install".
> #INSTALL_BIN=/usr/local/bin
> INSTALL_BIN=/opt/sasircm/drivers/drivers/bin
>
> #
> #
> # Changes should not be required below here.
> #
> #
>
> VERSION=1.8.4
>
> CC=$(COMPILER) $(INCLUDEDIRS)
> LINK=$(CC) $(LIBDIRS) $(LIBS)
>
> PROGRAMS=$(BIN_PROGRAMS) $(TEST_PROGRAMS)
>
> BIN_PROGRAMS=pngtogd pngtogd2 gdtopng gd2topng gd2copypal gdparttopng
> webpng
> TEST_PROGRAMS=gdtest gddemo gd2time gdtestft gdtestttf
>
> all: libgd.a $(PROGRAMS)
>
> install: libgd.a $(BIN_PROGRAMS)
> sh ./install-item 644 libgd.a $(INSTALL_LIB)/libgd.a
> sh ./install-item 755 pngtogd $(INSTALL_BIN)/pngtogd
> sh ./install-item 755 pngtogd2 $(INSTALL_BIN)/pngtogd2
> sh ./install-item 755 gdtopng $(INSTALL_BIN)/gdtopng
> sh ./install-item 755 gd2topng $(INSTALL_BIN)/gd2topng
> sh ./install-item 755 gd2copypal $(INSTALL_BIN)/gd2copypal
> sh ./install-item 755 gdparttopng $(INSTALL_BIN)/gdparttopng
> sh ./install-item 755 webpng $(INSTALL_BIN)/webpng
> sh ./install-item 755 bdftogd $(INSTALL_BIN)/bdftogd
> sh ./install-item 644 gd.h $(INSTALL_INCLUDE)/gd.h
> sh ./install-item 644 gdcache.h $(INSTALL_INCLUDE)/gdcache.h
> sh ./install-item 644 gd_io.h $(INSTALL_INCLUDE)/gd_io.h
> sh ./install-item 644 gdfontg.h $(INSTALL_INCLUDE)/gdfontg.h
> sh ./install-item 644 gdfontl.h $(INSTALL_INCLUDE)/gdfontl.h
> sh ./install-item 644 gdfontmb.h $(INSTALL_INCLUDE)/gdfontmb.h
> sh ./install-item 644 gdfonts.h $(INSTALL_INCLUDE)/gdfonts.h
> sh ./install-item 644 gdfontt.h $(INSTALL_INCLUDE)/gdfontt.h
>
> gddemo: gddemo.o libgd.a
> $(CC) gddemo.o -o gddemo $(LIBDIRS) $(LIBS)
>
> pngtogd: pngtogd.o libgd.a
> $(CC) pngtogd.o -o pngtogd $(LIBDIRS) $(LIBS)
>
> webpng: webpng.o libgd.a
> $(CC) webpng.o -o webpng $(LIBDIRS) $(LIBS)
>
> pngtogd2: pngtogd2.o libgd.a
> $(CC) pngtogd2.o -o pngtogd2 $(LIBDIRS) $(LIBS)
>
> gdtopng: gdtopng.o libgd.a
> $(CC) gdtopng.o -o gdtopng $(LIBDIRS) $(LIBS)
>
> gd2topng: gd2topng.o libgd.a
> $(CC) gd2topng.o -o gd2topng $(LIBDIRS) $(LIBS)
>
> gd2copypal: gd2copypal.o libgd.a
> $(CC) gd2copypal.o -o gd2copypal $(LIBDIRS) $(LIBS)
>
> gdparttopng: gdparttopng.o libgd.a
> $(CC) gdparttopng.o -o gdparttopng $(LIBDIRS) $(LIBS)
>
> gdtest: gdtest.o libgd.a
> $(CC) gdtest.o -o gdtest $(LIBDIRS) $(LIBS)
>
> gd2time: gd2time.o libgd.a
> $(CC) gd2time.o -o gd2time $(LIBDIRS) $(LIBS)
>
> gdtestft: gdtestft.o libgd.a
> $(CC) --verbose gdtestft.o -o gdtestft $(LIBDIRS) $(LIBS)
> gdtestttf: gdtestttf.o libgd.a
> $(CC) --verbose gdtestttf.o -o gdtestttf $(LIBDIRS) $(LIBS)
>
> libgd.a: gd.o gd_gd.o gd_gd2.o gd_io.o gd_io_dp.o gd_io_file.o gd_ss.o \
>
> gd_io_ss.o gd_png.o gdxpm.o gdfontt.o gdfonts.o gdfontmb.o
> gdfontl.o \
> gdfontg.o gdtables.o gdft.o gdttf.o gdcache.o gdkanji.o wbmp.o \
>
> gd_wbmp.o gdhelpers.o gd.h gdfontt.h gdfonts.h gdfontmb.h
> gdfontl.h \
> gdfontg.h gdhelpers.h
> rm -f libgd.a
> $(AR) rc libgd.a gd.o gd_gd.o gd_gd2.o gd_io.o gd_io_dp.o \
> gd_io_file.o gd_ss.o gd_io_ss.o gd_png.o gdxpm.o \
> gdfontt.o gdfonts.o gdfontmb.o gdfontl.o gdfontg.o \
> gdtables.o gdft.o gdttf.o gdcache.o gdkanji.o wbmp.o \
> gd_wbmp.o gdhelpers.o
> -ranlib libgd.a
>
> #libgd.a: gd.o gd_gd.o gd_gd2.o gd_io.o gd_io_dp.o gd_io_file.o gd_ss.o
> \
> # gd_io_ss.o gd_png.o gd_jpeg.o gdxpm.o gdfontt.o gdfonts.o
> gdfontmb.o gdfontl.o \
> # gdfontg.o gdtables.o gdft.o gdttf.o gdcache.o gdkanji.o wbmp.o \
>
> # gd_wbmp.o gdhelpers.o gd.h gdfontt.h gdfonts.h gdfontmb.h
> gdfontl.h \
> # gdfontg.h gdhelpers.h
> # rm -f libgd.a
> # $(AR) rc libgd.a gd.o gd_gd.o gd_gd2.o gd_io.o gd_io_dp.o \
> # gd_io_file.o gd_ss.o gd_io_ss.o gd_png.o gd_jpeg.o
> gdxpm.o \
> # gdfontt.o gdfonts.o gdfontmb.o gdfontl.o gdfontg.o \
> # gdtables.o gdft.o gdttf.o gdcache.o gdkanji.o wbmp.o \
> # gd_wbmp.o gdhelpers.o
> # -ranlib libgd.a
> clean:
> rm -f *.o *.a ${PROGRAMS} test/gdtest.jpg test/gdtest.wbmp
>
>
>
>
> --
> Johanne Duhaime
> IRCM
> 110 Ave des Pins O
> Montreal, Quebec
> 987-5556 (tel) 987-5644 (fax)
> Johanne_Duhaime at ircm.qc.ca
> http://www.ircm.qc.ca
>
>
----------------------------------
David Martin PhD
Bioinformatics Scientific Officer
Wellcome Trust Biocentre, Dundee
----------------------------------
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