seqret & getz

[Peter Rice]

Ruediger Braeuning wrote:
> Hi,
> 
> I've aliased the SRS getz command:
> 
> getz:    aliased to /kraal/srs/bin/solaris8/getz
> 
> I wanted to use SRS for the seqret command but seqret couldn't find getz.

EMBOSS can use an alternative (or full) name for getz. I did this when 
running SRS5 and SRS6 at Sanger, but it works for you too.

Add this line to your database definition in EMBOSS:

app: "/kraal/srs/bin/solaris8/getz"

Hope this helps,

Peter

-- 
------------------------------------------------
Peter Rice, LION Bioscience Ltd, Cambridge, UK
peter.rice at uk.lionbioscience.com +44 1223 224723