abiview

[Roehrig, Sascha]

Dear Tim,
 
I am running Emboss locally under Redhat 6.2.
Abiview produces the same error whether told to produce x11 or postscript
output. Starting the application under xwindows didn't help either.
I have not been able to run abiview with any ABI files, however, since
Chromas was able to open them I concluded that the integrity of the files is
ok. However, the tracer files all stem from the same sequencing company, so
maybe there is some problem there. 
 
Maybe you can send me one abi file, which works for you, so I can test it
locally here.
 
Best regards,
 
Sascha

-----Original Message-----
From: Tim Carver [mailto:tcarver at hgmp.mrc.ac.uk]
Sent: Wednesday, March 07, 2001 2:47 PM
To: Roehrig, Sascha
Subject: Re: abiview


Dear Sascha, 

   Sorry to hear about the problem you are having running abiview. It is
difficult to tell from the error message that you get as to what the problem
may actually be.  Have you been able to successfully run abiview with any
ABI files? What operating system are you using ? (I guess you are using your
own local version of Emboss). I'm not familiar with Chromas but I notice
it's a windows application. Have you got XWindows enabled on your machine
(i.e. are you using software like eXceed if you are using a pc). 


   Apologies to answer your question with more questions but it would help
in understanding the nature of the problem. 


Best Regards 
Tim Carver 
  


", Sascha" wrote: 


Dear all,I have been trying to get abiview to run. Unfortunately, the
program exits each time with the following error no matter what options I
choose. All other EMBOSS applications are running fine.start
quote-------->Uncaught exception Assertion failed raised at ajmem.c:78
EMBOSS An error in ajexcept.c at line 56:aborting.....<----------end
quoteThe tracer files are easily viewed and opened with "Chromas".Any
suggestions?CheersSascha 
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-- 

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Tim Carver, PhD,      

Bioinformatics, MRC HGMP Resource Centre,

Hinxton, Cambridge, CB10 1SB

Tel: +44 1223 494 532 Fax: +44 1223 494512

~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  

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