quick questions

[David Mathog]

> Calculated values are intended to be calculated in the ACD file.
Interfaces
> such as W2H should be able to do this in JavaScript, though in some
cases
> they have to simply treat values as integers.

The default value in this case is the end result of at least a hundred
lines of C code.

> 
> Testing the command line will have real problems for your original
idea,
> because an interface might be writing every option, with what it
considers
> the default value, on the command line.
> 

That's a good point.  W2H isn't like that, but some other interface
might be.  I
guess it won't hurt to add a couple of extra booleans to cover those
variables
whose default is difficult to calculate prior to the program running.

David Mathog
mathog at caltech.edu
Manager, Sequence Analysis Facility, Biology Division, Caltech