Compseq error
Sabino Liuni
sabino at area.ba.cnr.it
Mon Apr 2 15:02:08 UTC 2001
Hello everybody
I have received this information from our user about the Compseq program.
Any suggestion
Regards,
sabino Liuni
---------------------------------
I have noticed that the EMBOSS program COMPSEQ calculates incorrectly w-mer
nucleotide frequencies. For example the result obtained asking for mononuc
composition is like the following:
Total count 2846880
#
# Word Obs Count Obs Frequency Exp Frequency Obs/Exp Frequency
#
A 968947 0.3403540 0.2500000
1.3614160
C 454493 0.1596460 0.2500000
0.6385840
G 454493 0.1596460 0.2500000
0.6385840
T 968947 0.3403540 0.2500000
1.3614160
It seems sum up A+T and C+G.
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