[emboss-dev] Problems with EMBOSS seqret GenBank to GFF3

Peter Cock p.j.a.cock at googlemail.com
Tue Sep 6 09:48:17 UTC 2011

On Thu, Sep 1, 2011 at 4:47 PM, Peter Cock <p.j.a.cock at googlemail.com> wrote:
> On Tue, Aug 30, 2011 at 4:48 PM, Peter Rice <pmr at ebi.ac.uk> wrote:
>> [cut]
>> On 08/26/2011 03:27 AM, Peter Cock wrote:
>>> This is probably a good example to discuss on the GFF3
>>> song-devel mailing list - small and apparently very simple
>>> except for how to represent the (forward strand) join location.
>> We could propose something for the
>> http://www.sequenceontology.org/wiki/index.php/GFF3_best_practices
>> page to describe how to represent EMBL/GenBank entries
>> in GFF3 (after due discussion on the SONG-devel list)
> That sounds like a plan :)
> I'm on leave this week so I may not get to look into the details
> of this until next week - but don't worry, I'll only be ignoring
> you in the short term ;)
> Thanks,
> Peter C.

I see you've released some patches for EMBOSS 6.4.0 to
address some of the issues we've been discussing:



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