[emboss-dev] Specifying sequence lists for seqret

Rimvydas Naktinis naktinis at csc.fi
Thu Jul 29 11:47:18 UTC 2010


I'm developing EMBOSS integration into Chipster project 
(chipster.csc.fi). I was wondering if there's a way to specify sequence 
list (for example, when calling seqret) without creating any extra files?

I know there's a way to do it like this:
 > seqret @sequencelist
 > seqret list:sequencelist

But what I would need would look something like:
 > seqret "swiss:CASA1_RABIT,swiss:CASA1_HUMAN"

I've looked into USA format specification and it seems that there is 
actually no way to do it without creating some temporary file. Or am I 
missing something?

Rimvydas Naktinis
CSC — IT Center for Science Ltd

More information about the emboss-dev mailing list