[emboss-dev] computed maximum forbidden in ACD ?
Guy Bottu
gbottu at vub.ac.be
Tue Aug 17 18:43:58 UTC 2010
Dear Peter and Alan,
I was doing some development on wrappers4EMBOSS when I noted the
following. The file blast.acd contains :
integer: listsize [
information: "Show only the n best scoring sequences that
satisfy E() cutoff"
default: "500"
minimum: "0"
]
integer: align [
information: "Show only alignments for the n first
sequences"
default: "@(@($(listsize) < 250 ) ? $(listsize) : 250)"
expected: "250"
minimum: "0"
maximum: "$(listsize)" (this is line 100)
valid: "Integer 0 or more, but not < listsize"
]
When I run blast I get :
Error: File /OPT/emboss63/share/EMBOSS/acd/blast.acd line 100:
(wordsize) Attribute failrange: required with any calculated min/max
I am as good as certain that this behaviour has appeared with EMBOSS
version 6.3.0. In the past it was allowed to set a "maximum" that
depended on the choice of another parameter, and we can see that it
could occasionally make sense, but this seems from now on forbidden. I
this a bug or a feature ?
Regards,
Guy Bottu
More information about the emboss-dev
mailing list